Use of Ketosis in Modulating Metabolic Pathways
in Bipolar Disorder

This study tests whether individuals with euthymic T1 bipolar disorder (BD1), as compared to matched comparison subjects (CS), show dysregulation of the corticostriatal circuit in response to glucose, normalized by ketones. To answer this question, we are scanning N=50 BD1, N=50 CS participants using 7T fMRI and 1H MRS under overnight fasting and acute metabolic challenge using Glc and D-βHB, individually weight-dosed and calorically matched across conditions. From these data, we compare neurobiological (BOLD, glutamate (Glu), glutamine (Glm), GABA, dopamine (DA)), autonomic, and behavioral responses across populations and conditions. Taking an NIMH Research Domain Criteria (RDoC) approach, we additionally analyze all outcome measures using clinical symptoms (mood, energy, arousal) and baseline neurotransmitter levels (Glu, GABA, DA) as continuous regressors, independent of diagnoses.

  • As a field, control systems engineering has developed quantitative methods to characterize the regulation of systems or processes, whose functioning is ubiquitous within synthetic systems. In this context, a control circuit is objectively “well regulated” when discrepancy between desired and achieved output trajectories is minimized and “robust” to the degree that it can regulate well in response to a wide range of stimuli. Most psychiatric disorders are assumed to reflect dysregulation of brain circuits. Yet, probing circuit regulation requires fundamentally different analytic strategies than the correlations relied upon for analyses of connectivity and their resultant networks. Here, we demonstrate how well-established methods for system identification in control systems engineering may be applied to functional magnetic resonance imaging (fMRI) data to extract generative computational models of human brain circuits. As required for clinical neurodiagnostics, we show these models to be extractable even at the level of the single subject. Control parameters provide two quantitative measures of direct relevance for psychiatric disorders: a circuit’s sensitivity to external perturbation and its dysregulation.

    Read Article in Computational Brain & Behavior

Mujica-Parodi (Contact PI), Ratai, Ongur, Strey
07/01/2023–06/30/2026
($3,000,000)

NEUROBLOX: a Data-Driven Platform
for Computational Psychiatry

NEUROBLOX is a software platform designed to provide computational psychiatry with a comprehensive set of tools for control circuit system identification and scientific AI. Here, we focus on library construction of a diverse set of electrophysiologically-validated circuit models across scales, implementation of circuit model motifs for scientific AI, algorithm development for simulation-based optimization of experiments, GUI interface, and beta-testing.

Mujica-Parodi (Contact PI), Miller, Edelman, Rackauckas, Granger, Strey
07/1/2021-9/30/2025
($3,221,433)

Using Artificial Intelligence to Identify Accelerated
Brain Aging in World Trade Center Responders

The men and women who worked in rescue and recovery operations at the 9/11 World Trade Center (WTC) site are developing cognitive impairment at mid-life, decades before age-based cognitive impairment usually is detected. This study seeks to implement a novel measure of brain age, optimized to be sensitive to midlife neurological changes and combines it with artificial intelligence to understand the mechanisms through which exposures may have affected WTC responders. We are conducting data analyses of large-scale brain MRI training data sets (including UK Biobank, N=19,831) to train a deep learning model for neurobiological signatures of aging and its potential mechanisms. We then compare neurobiological features seen in WTC responders to these signatures.

  • Neuroimaging studies generally provide evidence only on a narrow aspects of the human brain function, suffering from small sample sizes and are hard to reproduce. These factors severely limit synthesis of neuroimaging findings and our ability to reach a global view of human brain organization, mapping and decoding. In this paper, we present a novel prediction based framework called Neuropredictome that allows identification of statistically significant linkages between phenotypes and neuroimaging features on UK-Biobank data. We evaluate phenotype linkage to brain fMRI activity on 4926 variables pertaining to the health, physiology, psychology, social and economic state for 19,831 subjects. We corroborate our identified regions of the brain with previous work by providing a novel quantitative evaluation of how well our results align with existing meta-analyses of 14,371 published neuroimaging research articles. Our analysis is presented as a public resource at https://neuropredictome.com providing an interpretable view of human brain organization and decoding, to assist in hypothesis generation and evaluating future studies.

    Read Article in IEEE BIBM

Mujica-Parodi (Contact PI) and Luft
06/01/2021-05/30/2024
($500,000)
NIA/NIH, CDC 1R21OH012248-01

Protecting the Aging Brain: Self-Organizing Networks
and Multi-Scale Dynamics under Energy Constraints

Using insulin resistance to tighten energy constraints and ketones to release them, we propose to use animal (DREADDs/patch-clamp/calcium imaging) and human (31P/1H-MRS, 7T fMRI, MEG) data to characterize changes in excitatory/inhibitory neuron firing dynamics and their implications for connectivity. Kuramoto and Maximum Caliber analyses will then use these data to identify driving oscillators and cellular automaton-like “rules” that neurons might follow in guiding emergent self-organization. In so doing, we consider two competing alternatives, relating to synchronization and optimization, as well as developing generative techniques for identifying constraints unbiased by our a priori hypotheses.

  • Brain aging is associated with hypometabolism and global changes in functional connectivity. Using functional MRI (fMRI), we show that network synchrony, a collective property of brain activity, decreases with age. Applying quantitative methods from statistical physics, we provide a generative (Ising) model for these changes as a function of the average communication strength between brain regions. We find that older brains are closer to a critical point of this communication strength, in which even small changes in metabolism lead to abrupt changes in network synchrony. Finally, by experimentally modulating metabolic activity in younger adults, we show how metabolism alone—independent of other changes associated with aging—can provide a plausible candidate mechanism for marked reorganization of brain network topology.

    Read Article in PNAS

  • Epidemiological studies suggest that insulin resistance accelerates progression of age-based cognitive impairment, which neuroimaging has linked to brain glucose hypometabolism. As cellular inputs, ketones increase Gibbs free energy change for ATP by 27% compared to glucose. Here we test whether dietary changes are capable of modulating sustained functional communication between brain regions (network stability) by changing their predominant dietary fuel from glucose to ketones. We first established network stability as a biomarker for brain aging using two large-scale (n = 292, ages 20 to 85 y; n = 636, ages 18 to 88 y) 3 T functional MRI (fMRI) datasets. To determine whether diet can influence brain network stability, we additionally scanned 42 adults, age < 50 y, using ultrahigh-field (7 T) ultrafast (802 ms) fMRI optimized for single-participant-level detection sensitivity. One cohort was scanned under standard diet, overnight fasting, and ketogenic diet conditions. To isolate the impact of fuel type, an independent overnight fasted cohort was scanned before and after administration of a calorie-matched glucose and exogenous ketone ester (d-β-hydroxybutyrate) bolus. Across the life span, brain network destabilization correlated with decreased brain activity and cognitive acuity. Effects emerged at 47 y, with the most rapid degeneration occurring at 60 y. Networks were destabilized by glucose and stabilized by ketones, irrespective of whether ketosis was achieved with a ketogenic diet or exogenous ketone ester. Together, our results suggest that brain network destabilization may reflect early signs of hypometabolism, associated with dementia. Dietary interventions resulting in ketone utilization increase available energy and thus may show potential in protecting the aging brain.

    Read Article in PNAS

  • Type 2 diabetes mellitus (T2DM) is known to be associated with neurobiological and cognitive deficits; however, their extent, overlap with aging effects, and the effectiveness of existing treatments in the context of the brain are currently unknown.

    We characterized neurocognitive effects independently associated with T2DM and age in a large cohort of human subjects from the UK Biobank with cross-sectional neuroimaging and cognitive data. We then proceeded to evaluate the extent of overlap between the effects related to T2DM and age by applying correlation measures to the separately characterized neurocognitive changes. Our findings were complemented by meta-analyses of published reports with cognitive or neuroimaging measures for T2DM and healthy controls (HCs). We also evaluated in a cohort of T2DM-diagnosed individuals using UK Biobank how disease chronicity and metformin treatment interact with the identified neurocognitive effects.

    The UK Biobank dataset included cognitive and neuroimaging data (N = 20,314), including 1012 T2DM and 19,302 HCs, aged between 50 and 80 years. Duration of T2DM ranged from 0 to 31 years (mean 8.5 ± 6.1 years); 498 were treated with metformin alone, while 352 were unmedicated. Our meta-analysis evaluated 34 cognitive studies (N = 22,231) and 60 neuroimaging studies: 30 of T2DM (N = 866) and 30 of aging (N = 1088). Compared to age, sex, education, and hypertension-matched HC, T2DM was associated with marked cognitive deficits, particularly in executive functioning and processing speed. Likewise, we found that the diagnosis of T2DM was significantly associated with gray matter atrophy, primarily within the ventral striatum, cerebellum, and putamen, with reorganization of brain activity (decreased in the caudate and premotor cortex and increased in the subgenual area, orbitofrontal cortex, brainstem, and posterior cingulate cortex). The structural and functional changes associated with T2DM show marked overlap with the effects correlating with age but appear earlier, with disease duration linked to more severe neurodegeneration. Metformin treatment status was not associated with improved neurocognitive outcomes.

    The neurocognitive impact of T2DM suggests marked acceleration of normal brain aging. T2DM gray matter atrophy occurred approximately 26% ± 14% faster than seen with normal aging; disease duration was associated with increased neurodegeneration. Mechanistically, our results suggest a neurometabolic component to brain aging. Clinically, neuroimaging-based biomarkers may provide a valuable adjunctive measure of T2DM progression and treatment efficacy based on neurological effects.

    Read Article in eLife

  • Aging is associated with impaired signaling between brain regions when measured using resting-state fMRI. This age-related destabilization and desynchronization of brain networks reverses itself when the brain switches from metabolizing glucose to ketones. Here, we probe the mechanistic basis for these effects. First, we established their neuronal basis using two datasets acquired from resting-state EEG (Lifespan: standard diet, 20-80 years, N = 201; Metabolic: individually weight-dosed and calorically-matched glucose and ketone ester challenge, μage = 26.9 ± 11.2 years, N = 36). Then, using the multi-scale Larter-Breakspear neural mass model, we identified the unique set of mechanistic parameters consistent with our clinical data. Together, our results implicate potassium (K+) gradient dysregulation as a mechanism for age-related neural desynchronization and its reversal with ketosis, the latter finding of which is consistent with direct measurement of ion channels. description

    Read Preprint in bioRXiv

  • The brain primarily relies on glycolysis for mitochondrial respiration but switches to alternative fuels such as ketone bodies (KB) during low glucose availability. Neuronal KB uptake, which does not rely on the glucose transporter 4 (GLUT4) and insulin, has shown promising clinical applications in alleviating the neurological and cognitive effects of disorders with hypometabolic components. However, the specific mechanisms by which such interventions affect neuronal functions are poorly understood. In this study, we pharmacologically blocked GLUT4 to investigate the effects of the exogenous KB D-β-hydroxybutyrate (D-βHb) on mouse brain metabolism during acute insulin resistance (AIR). We found the impact of D-βHb to be distinct across neuronal compartments: AIR decreased synaptic activity and LTP, and impaired axonal conduction, synchronization, and action potential (AP) properties. D-βHb rescued neuronal functions associated with axonal conduction, synchronization and LTP.

    Read Preprint in bioRXiv

  • Glucose metabolism is impaired in brain aging and several neurological conditions. Beneficial effects of ketones have been reported in the context of protecting the aging brain, however, their neurophysiological effect is still largely uncharacterized, hurdling their development as a valid therapeutic option. In this report, we investigate the neurochemical effect of the acute administration of a ketone d-beta-hydroxybutyrate (D-βHB) monoester in fasting healthy participants with ultrahigh-field proton magnetic resonance spectroscopy (MRS). In two within-subject metabolic intervention experiments, 7 T MRS data were obtained in fasting healthy participants (1) in the anterior cingulate cortex pre- and post-administration of D-βHB (N = 16), and (2) in the posterior cingulate cortex pre- and post-administration of D-βHB compared to active control glucose (N = 26). Effect of age and blood levels of D-βHB and glucose were used to further explore the effect of D-βHB and glucose on MRS metabolites. Results show that levels of GABA and Glu were significantly reduced in the anterior and posterior cortices after administration of D-βHB. Importantly, the effect was specific to D-βHB and not observed after administration of glucose. The magnitude of the effect on GABA and Glu was significantly predicted by older age and by elevation of blood levels of D-βHB. Together, our results show that administration of ketones acutely impacts main inhibitory and excitatory transmitters in the whole fasting cortex, compared to normal energy substrate glucose. Critically, such effects have an increased magnitude in older age, suggesting an increased sensitivity to ketones with brain aging.

    Read Article in Neuropsychopharmacology

  • Metabolic limitations within the brain frequently arise in the context of aging and disease. As the largest consumers of energy within the brain, ion pumps that maintain the neuronal membrane potential are the most affected when energy supply becomes limited. To characterize the effects of such limitations, we analyze the ion gradients present in a conductance-based (Morris–Lecar) neural mass model. We show the existence and locations of Neimark–Sacker and period-doubling bifurcations in the sodium, calcium, and potassium reversal potentials and demonstrate that these bifurcations form physiologically relevant bounds of ion gradient variability. Within these bounds, we show how depolarization of the gradients causes decreased neural activity. We also show that the depolarization of ion gradients decreases inter-regional coherence, causing a shift in the critical point at which the coupling occurs and thereby inducing loss of synchrony between regions. In this way, we show that the Larter-Breakspear model captures ion gradient variability present at the microscale level and propagates these changes to the macroscale effects such as those observed in human neuroimaging studies.

    Read Article in Chaos, Solitons & Fractals

Mujica-Parodi (Contact PI), Dill, Skiena, Ratai, Smith
10/1/2019-12/31/2023 
($2,500,000)
NSF1926781 BRAIN Initiative, NCS Frontiers Grant
09/1/2017-08/31/2021
($1,000,000)
W.M. Keck Foundation Medical Research Grant

Completed

fMRI Dynamic Phantom for Improved Detection of Resting-State Networks

The major goals of this project are the validation of the 2nd Generation prototype and associated algorithms for artifact correction and calibration of fMRI across scanners, the development of good manufacturing procedures for mass production, and beta testing for commercialization with 20 high-impact/innovation imaging centers around the world.

MPI: Mujica-Parodi w/ALA Scientific Instruments., Inc.

1/1/2017-9/30/2021

($1,725,000)

NIDA/NIH 1 R44 DA043277-01 SBIR: Phases 1 & 2

 

fMRI Dynamic Phantom for Improved Detection of Resting-State Networks

The major goal of this project is to conduct research and development in support of transitioning from a 1st generation dynamic phantom prototype to a 2nd generation dynamic phantom, concentrating on improvements in durability and precision required for commercialization.

co-PI: Mujica-Parodi (PI: ALA Scientific Instr., Inc.)

7/2016-6/2018

($225,000)

NSF 1622525 STTR: Phase 1

 

fMRI Dynamic Phantom for Improved Detection of Resting-State Networks

The major goal of this project is to design and build an automated (robotic) system for the manufacture of gel gradients used in our patented fMRI dynamic phantom.

PI: Mujica-Parodi

5/2016-11/2016

($50,000)

NHLBI /NIH 5U01HL12752202 (Clinton Rubin, PI)

 

NCS-FO: Collaborative Research: Individual Variability in Human Brain Connectivity, Modeled Using Multi-Scale Dynamics Under Energy Constraints

The major goal of this project is to develop methods for computationally integrating neuronal-to-hemodynamic scales to provide a mechanistic basis for neuroimaging biomarkers that predict age-based cognitive decline.

MPI: Mujica-Parodi  (w/Hava Siegelmann, Ph.D.)

8/2015-7/2017

($300,000)

NSF ECCS1533257 BRAIN Initiative

 

Multi-Scale Modeling: Metabolic Constraints on Self-Organizing Brain Networks

The major goal of this project is to develop data-driven computational models of neuronal energy transfer in the metabolism of glucose, glycogen, and ketones.

PI: Mujica-Parodi

5/2015-6/2017

($100,000)

National Academies Keck Futures Initiative NAFKICB8

 

Using Control Systems to Predict Individualized Dynamics of Nicotine Cravings

The major goal of this project is to develop the instrumentation, pharmacokinetic, and computational methods required to use individualized subject-specific parameters, derived from control systems data-driven modeling of each smoker’s reward circuit (ultra-high-field fMRI), to predict the frequency at which that smoker will self-administer each puff of nicotine during scanning.

PI: Mujica-Parodi

7/2014-6/2017

($510,832)

NIDA/NIH 3R2DA03846702S1 CEBRA

 

Using Network Dynamic fMRI for Pre-surgical Localization of Epileptogenic Foci

The major goals of this project are: first, to develop a dynamic phantom prototype to optimize acquisition parameters in ultra-high-field fMRI for dynamic fidelity; second, to use fluctuation analyses to identify the origin of network-wide dysregulation in the brain; and third, to demonstrate that the observed dysregulation predicts seizure foci as validated using EEG.

PI: Mujica-Parodi

8/2013-7/2016

($534,155)

NSF CBET1264440

 

PECASE: Using Control Systems to Quantify Limbic Dysregulation for Neurobiologically-Based Diagnoses of Psychiatric Disabilities

The major goals of this grant are to develop fMRI and NIRS-based neurodiagnostics and improved support vector machine classification algorithms for psychiatric disorders (schizophrenia, anxiety, depression).

PI: Mujica-Parodi

7/2010-6/2016

($557,801)

NSF CBET0954643

Presidential Early Career Award in Science and Engineering

 

The neurobiological basis for individual differences in pattern-detection within low signal/noise environments: an fMRI study.

The major goal of this grant was to develop the methods necessary to derive subject-specific control circuits from ultra-high-field fMRI time-series, capable of predicting individual decision-making within a complex environment.

PI: Mujica-Parodi

7/2011-12/2015

($512,594)

ARL/USARDEC Z847709/W911NF1110246

 

Trajectories of Reward Sensitivity and Depression Across Adolescence

 The major goal of this grant is to identify fMRI-EEG biomarkers for depression, using longitudinal scanning from ages 13-17.

co-I: Mujica-Parodi (PI: Greg Hajcak)                          

8/2012-5/2016                       

($1,250,000)

NIMH/NIH 3R01MH09776704S1

 

Computational Modeling of Oxytocin in the Regulation of Trust

The major goal of this grant was to identify the neurocircuit and circuit dynamics of oxytocin, using human neuroimaging (fMRI and MEG), rat electrophysiology, and computational modeling.

PI: Mujica-Parodi

2/2012-7/2015

($900,000)

ONR N000141210393

 

GlucoREAD Patch: a Novel Non-Invasive Continuous Glucose Sensor Using Near-Infrared Spectroscopy and an Optical Probe

The major goal of this grant was to conduct research and development/develop intellectual property for a non-invasive continuous glucometer.

PI: Mujica-Parodi

2/2012-6/2015

($35,000)

Center for Integration of Medicine & Innovative Technologies,

National Prize in Primary Healthcare, 3rd Place

 

Development of Dynamic Phantom for fMRI Calibration of Time-Series

The major goal of this project was to develop the first proof of concept for a dynamic phantom.

PI: Mujica-Parodi

9/2011-7/2014

($121,500)

NSF 1000116964

 

EAGER: Using Network Dynamic fMRI for Pre-surgical Localization of Epileptogenic Foci

The major goal of this project was to develop the signal processing methods necessary to conduct fluctuation analyses on fMRI data, so that these could later be applied to epileptic patients to identify seizure foci.

PI: Mujica-Parodi

9/2011-7/2013

($300,000)

NSF CBET1141995 EAGER

 

Ambiguity-Priming Facilities Pattern Detection and Resistance to Set-Shifting

The major goal of this project was to develop mathematical modeling of how perceptual and cognitive set-shifting (switching between paradigms) changes with the manipulation of signal/noise.

PI: Mujica-Parodi

6/2009-5/2010

($50,000)

DARPA ARO W911NF0910462 STIR

 

Using Optical Topography to Optimize Functional MRI for Neurobiology-Based Complex Systems Analysis

This instrumentation grant provided our laboratory with a Hitachi ETG-4000 machine, for which we developed novel software capable of analyzing and visualizing NIRS data.

PI: Mujica-Parodi

4/2005-5/2009

(443,000)

ONR N000140710871 DURIP

 

Genetic Polymorphisms, the Stress Response, and their Interaction with the Immune System

The major goal of this project was to identify epigenetic changes that occur under conditions of acute stress.

MPI: Mujica-Parodi (with Wayne Ensign, Ph.D.)

9/2005-8/2009

($719,051)

 

Identification and Isolation of Human Alarm Pheromones: Olfactory Cues to Perception of Conspecific Stress

The major goal of this project was to provide the first neurobiological evidence for the existence of human alarm pheromones.

PI: Mujica-Parodi

4/2005-5/2009

($1,187,926)

DARPA W81XWH0510341/W911QY06C0106 Renewed x2

 

Variability Between Individuals with Respect to Cognitive and Physiological Resilience to Stress

The major goal of this project was to use regulation of the prefrontal-limbic control circuit to develop neurodiagnostics (fMRI, NIRS) capable of predicting individual variability in acute stress resilience (civilian environment).

PI: Mujica-Parodi

10/2003-9/2013

($2,924,853)

ONR N000140410051 Renewed x2

 

Operational Stress in Special Forces during SERE

The major goal of this project was to use regulation of the prefrontal-limbic control circuit to develop neurodiagnostics capable of predicting individual variable in acute stress resilience (operational environment).

co-PI: Mujica-Parodi (PI: LT Marcus Taylor)

10/2005-9/2008

($225,000)

ONR N000146WXZ0141

 

Panic Attacks and the Endogenous Opioid System

The major goal of this project was to test the hypothesis that panic attacks result from the misappropriation of the endogenous opioid system.

co-I: Mujica-Parodi (PI: Donald Klein)

7/2003-6/2005

($535,387)

NIMH/NIH 5 R01 MH067749 02

 

Cognitive Processing and Stress in Schizophrenia

The major goal of this project was to identify interactions between information processing and emotional arousal in the development of psychotic delusions, using behavioral measures.

Role: PI

10/2000-9/2004

($60,000)

NARSAD Young Investigator Award (Essel Investigator)

 

Neuroimaging of Pre-attentive Sensory Gating

The major goal of this project was to identify interactions between information processing and emotional arousal in the development of psychotic delusions, using fMRI.

PI: Mujica-Parodi

10/2001-9/2002

($5,000)

New York State Psychiatric Institute Research Support Grant

 Cognitive Processing and Stress in Schizophrenia

The major goal of this project was to identify interactions between information processing and emotional arousal in the development of psychotic delusions, using behavioral measures.

PI: Mujica-Parodi

10/1999-9/2000

($3,000)

Frontier Fund for Psychiatric Research